MolNFT v1 · #186428 · protein
Crystal structure of pcdn-38B, a broadly neutralizing anti-HIV antibody
7RDM: “Crystal structure of pcdn-38B, a broadly neutralizing anti-HIV antibody”. X-ray diffraction, 5 ligands (NAG, BMA, MAN). MolNFT v1 #186428 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RDM
- Type
- protein
- Length
- 448 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, BMA, MAN, FUC, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 216 | — | — |
| B | — | protein | 232 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains B, A
- BMA · beta-D-mannopyranose · sugar
- MAN · alpha-D-mannopyranose · sugar
- FUC · alpha-L-fucopyranose · sugar · chains B
- PO4 · Phosphate ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RDM · Crystal structure of PCDN-38B, a broadly neutralizing anti-HIV antibody · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7RDM · PDBe 7RDM
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