MolNFT v1 · #186403 · protein

Crystal structure of triosephosphate isomerase from ktedonobacter racemifer

7RCQ: “Crystal structure of triosephosphate isomerase from ktedonobacter racemifer”. X-ray diffraction, 1 ligand (NO3), 1 pocket (best druggability 0.41). MolNFT v1 #186403 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7RCQ
Type: protein
Length: 251 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Triosephosphate isomerase
EC: 5.3.1.1
UniProt: D6TR79
Ligands: NO3
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Triosephosphate isomerase (EC 5.3.1.1)	protein	251	48% helix, 15% strand	D6TR79

Ligands and binding sites

NO3 · Nitrate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.41	0.76	21	empty

Compared structures

7RCQ · Crystal structure of triosephosphate isomerase from Ktedonobacter racemifer · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6TR79
Elsewhere: RCSB PDB 7RCQ · PDBe 7RCQ · UniProt D6TR79

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