MolNFT v1 · #186304 · protein
Methanococcus maripaludis chaperonin, open conformation 4
7R9J: “Methanococcus maripaludis chaperonin, open conformation 4”. Electron microscopy, 10 pockets (best druggability 0.82). MolNFT v1 #186304 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7R9J
- Type
- protein
- Length
- 505 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chaperonin
- UniProt
- Q877G8
- Pockets
- 10 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 43% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| J | Chaperonin | protein | 505 | 43% helix, 6% strand | Q877G8 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1086 | 0.82 | 0.83 | 105 | empty |
| 2 | 334 | 0.81 | 0.91 | 47 | empty |
| 3 | 297 | 0.78 | 0.89 | 50 | empty |
| 4 | 264 | 0.73 | 0.87 | 35 | empty |
| 5 | 364 | 0.73 | 0.84 | 56 | empty |
Compared structures
- 7R9J · Methanococcus maripaludis chaperonin, open conformation 4 · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q877G8
- Elsewhere: RCSB PDB 7R9J · PDBe 7R9J · UniProt Q877G8
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