MolNFT v1 · #186278 · protein
Crystal structure of pseudooceanicola lipolyticus argonaute (semet labeled protein)
7R8K: “Crystal structure of pseudooceanicola lipolyticus argonaute (semet labeled protein)”. X-ray diffraction, 6 pockets (best druggability 0.76). MolNFT v1 #186278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7R8K
- Type
- protein
- Length
- 768 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Argonaute
- UniProt
- A0A2M8J4C7
- Pockets
- 6 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Argonaute | protein | 768 | 25% helix, 21% strand | A0A2M8J4C7 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1011 | 0.76 | 0.78 | 88 | empty |
| 2 | 793 | 0.73 | 0.78 | 67 | empty |
| 3 | 55 | 0.60 | 0.91 | 21 | empty |
| 4 | 74 | 0.57 | 0.87 | 26 | empty |
| 5 | 348 | 0.52 | 0.73 | 48 | empty |
Modifications
Observed in the structure: 19 modified (engineered).
Compared structures
- 7R8K · Crystal structure of Pseudooceanicola lipolyticus Argonaute (SeMet labeled protein) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2M8J4C7
- Elsewhere: RCSB PDB 7R8K · PDBe 7R8K · UniProt A0A2M8J4C7
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