MolNFT v1 · #186265 · protein
Structure of mouse BAI1 (ADGRB1) in complex with mouse nogo receptor (RTN4R)
7R86: “Structure of mouse BAI1 (ADGRB1) in complex with mouse nogo receptor (RTN4R)”. X-ray diffraction, 6 ligands (PAB, NAG, MAN). MolNFT v1 #186265 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7R86
- Type
- protein
- Length
- 653 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q99PI8, Q3UHD1
- Ligands
- PAB, NAG, MAN, FUC, BGC, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 284 | — | Q99PI8 |
| B | — | protein | 285 | — | Q99PI8 |
| C | — | protein | 44 | — | Q3UHD1 |
| D | — | protein | 40 | — | Q3UHD1 |
Ligands and binding sites
- PAB · 4-aminobenzoic acid · ligand · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, D, B, C
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A, C, B, D
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, C, B, D
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains C, D
- CL · Chloride ion · ion · 2 copies · chains A, C, B, D
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, C, B
- PG4 · Tetraethylene glycol · additive · chains A
- ACT · Acetate ion · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7R86 · Structure of mouse BAI1 (ADGRB1) in complex with mouse Nogo receptor (RTN4R) · the same entry in another collection · chain D against D, TM-score 1.00
- Q99PI8 · AlphaFold monomer V2.0 prediction for reticulon-4 receptor (Q99PI8) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q3UHD1 · AlphaFold monomer V2.0 prediction for adhesion G protein-coupled receptor B1 (Q3UHD1) · a predicted model of the same protein · chain D against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99PI8
- Every structure of UniProt Q3UHD1
- Elsewhere: RCSB PDB 7R86 · PDBe 7R86 · UniProt Q99PI8 · UniProt Q3UHD1
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