MolNFT v1 · #186251 · protein
SARS-cov-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the rbd and S2D106)
7R7N: “SARS-cov-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the rbd…”. Electron microscopy, 2 ligands (NAG, FUC). MolNFT v1 #186251 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7R7N
- Type
- protein
- Length
- 391 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 109 | — | — |
| E | — | protein | 189 | — | P0DTC2 |
| L | — | protein | 93 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains E
- FUC · alpha-L-fucopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7R7N · SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7R7N · PDBe 7R7N · UniProt P0DTC2
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