MolNFT v1 · #186228 · protein
SARS-cov-2 spike receptor-binding domain (rbd) in complex with S2E12 Fab, S309 Fab, and S304 Fab
7R6X: “SARS-cov-2 spike receptor-binding domain (rbd) in complex with S2E12 Fab, S309 Fab, and S304 Fab”. X-ray diffraction, 2 ligands (NAG, CL). MolNFT v1 #186228 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7R6X
- Type
- protein
- Length
- 1,189 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, CL
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 164 | — | — |
| H | — | protein | 186 | — | — |
| R | — | protein | 199 | — | P0DTC2 |
| B | — | protein | 213 | — | — |
| A | — | protein | 227 | — | — |
| D | — | protein | 78 | — | — |
| C | — | protein | 122 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains R, B, A
- CL · Chloride ion · ion · 2 copies · chains R, B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7R6X · SARS-CoV-2 spike receptor-binding domain (RBD) in complex with S2E12 Fab, S309 Fab, and… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7R6X · PDBe 7R6X · UniProt P0DTC2
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