MolNFT v1 · #186182 · protein
The SARS-cov-2 spike in complex with the 1.29 neutralizing nanobody
7R4Q: “The SARS-cov-2 spike in complex with the 1.29 neutralizing nanobody”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #186182 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7R4Q
- Type
- protein
- Length
- 3,414 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 1060 | — | P0DTC2 |
| B | — | protein | 1054 | — | P0DTC2 |
| D, E | — | protein | 120 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 43 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7R4Q · The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7R4Q · PDBe 7R4Q · UniProt P0DTC2
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