MolNFT v1 · #186106 · protein

Crystal structure of a dyp-type peroxidase 6E10 variant from pseudomonas putida

7QYZ · Dyp-type peroxidase family protein: “Crystal structure of a dyp-type peroxidase 6E10 variant from pseudomonas putida”. X-ray diffraction, 1 ligand (HEM), 2 pockets (best druggability 0.82). MolNFT v1 #186106 on GenesisL1: 3D…

PDB: 7QYZ
Type: protein
Length: 282 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dyp-type peroxidase family protein
UniProt: Q88HV5
Ligands: HEM
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dyp-type peroxidase family protein	protein	282	27% helix, 26% strand	Q88HV5

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	280	0.82	0.93	34	HEM
2	136	0.50	0.79	31	empty

Compared structures

7QYZ · Crystal structure of a DyP-type peroxidase 6E10 variant from Pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88HV5
Elsewhere: RCSB PDB 7QYZ · PDBe 7QYZ · UniProt Q88HV5

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