MolNFT v1 · #186102 · protein
Mosquitocidal CRY11BA determined at pH 6.5 from naturally-occurring nanocrystals by serial femtosecond crystallography
7QYD · Pesticidal crystal protein CRY11BA: “Mosquitocidal CRY11BA determined at pH 6.5 from naturally-occurring nanocrystals by serial femtosecond…”. X-ray diffraction, 12 pockets (best druggability 0.82). MolNFT v1 #186102 on GenesisL1…
- PDB
- 7QYD
- Type
- protein
- Length
- 1,267 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pesticidal crystal protein CRY11BA
- UniProt
- Q45730
- Pockets
- 12 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pesticidal crystal protein CRY11BA | protein | 637 | 33% helix, 29% strand | Q45730 |
| B | Pesticidal crystal protein CRY11BA | protein | 630 | 33% helix, 29% strand | Q45730 |
Pockets
12 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 854 | 0.82 | 0.85 | 95 | empty |
| 2 | 423 | 0.68 | 0.80 | 52 | empty |
| 3 | 275 | 0.64 | 0.81 | 44 | empty |
| 4 | 330 | 0.62 | 0.79 | 35 | empty |
| 5 | 314 | 0.61 | 0.78 | 41 | empty |
Interfaces
1 interface between chains.
- A–B · 1100 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 7QYD · mosquitocidal Cry11Ba determined at pH 6.5 from naturally-occurring nanocrystals by… · the same entry in another collection · chain A against A, TM-score 1.00
- Q45730 · AlphaFold monomer V2.0 prediction for pesticidal crystal protein CRY11BA (Q45730) · a predicted model of the same protein · chain B against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q45730
- Elsewhere: RCSB PDB 7QYD · PDBe 7QYD · UniProt Q45730
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