MolNFT v1 · #186045 · protein

Room temperature in-situ SARS-cov-2 mpro with bound Z4439011520

7QT7 · 3C-like proteinase NSP5: “Room temperature in-situ SARS-cov-2 mpro with bound Z4439011520”. X-ray diffraction, 1 ligand (UHV), 3 pockets (best druggability 0.54). MolNFT v1 #186045 on GenesisL1: 3D structure, binding sites and…

PDB: 7QT7
Type: protein
Length: 304 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3C-like proteinase NSP5
EC: 3.4.22.69
UniProt: P0DTD1
Ligands: UHV
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	3C-like proteinase NSP5 (EC 3.4.22.69)	protein	304	26% helix, 29% strand	P0DTD1

Ligands and binding sites

UHV · N-(5-tert-butyl-1,2-oxazol-3-yl)-N-[(1R)-2-[(4-methoxy-2-methylphenyl)amino]-2-oxo-1-(pyridin-3-yl) ethyl]propanamide · ligand · chains A
DMS · Dimethyl sulfoxide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	219	0.54	0.78	29	UHV
2	93	0.49	0.82	18	DMS
3	186	0.47	0.75	30	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

7QT7 · Room temperature In-situ SARS-CoV-2 MPRO with bound Z4439011520 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTD1
Elsewhere: RCSB PDB 7QT7 · PDBe 7QT7 · UniProt P0DTD1

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