MolNFT v1 · #186042 · protein
Crystal structure of homing endonuclease-associated tlivma intein (C1A, D333-339)
7QSU · V-ATPase: “Crystal structure of homing endonuclease-associated tlivma intein (C1A, D333-339)”. X-ray diffraction, 4 pockets (best druggability 0.50). MolNFT v1 #186042 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QSU
- Type
- protein
- Length
- 366 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- V-ATPase
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | V-ATPase | protein | 366 | 25% helix, 42% strand | — |
Ligands and binding sites
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.50 | 0.78 | 22 | empty |
| 2 | 98 | 0.37 | 0.75 | 16 | empty |
| 3 | 79 | 0.35 | 0.76 | 21 | empty |
| 4 | 63 | 0.28 | 0.74 | 18 | empty |
Compared structures
- 7QSU · Crystal structure of homing endonuclease-associated TliVMA intein (C1A, d333-339) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7QSU · PDBe 7QSU
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