MolNFT v1 · #185984 · protein

Structure of a small alarmone hydrolase from leptospira levettii

7QOE · Hdc domain-containing protein: “Structure of a small alarmone hydrolase from leptospira levettii”. X-ray diffraction, 1 ligand (MN), 1 pocket (best druggability 0.71). MolNFT v1 #185984 on GenesisL1: 3D structure, binding sites and…

PDB: 7QOE
Type: protein
Length: 187 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hdc domain-containing protein
UniProt: A0A2N0AXP5
Ligands: MN
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hdc domain-containing protein	protein	187	74% helix, 1% strand	A0A2N0AXP5

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	540	0.71	0.80	39	empty

Compared structures

7QOE · Structure of a small alarmone hydrolase from Leptospira levettii · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2N0AXP5
Elsewhere: RCSB PDB 7QOE · PDBe 7QOE · UniProt A0A2N0AXP5

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