MolNFT v1 · #185973 · protein
The receptor binding domain of SARS-cov-2 omicron variant spike glycoprotein in complex with beta-55 and EY6A fabs
7QNW: “The receptor binding domain of SARS-cov-2 omicron variant spike glycoprotein in complex with beta-55 and EY6A…”. X-ray diffraction, 2 ligands (NAG, CL). MolNFT v1 #185973 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QNW
- Type
- protein
- Length
- 1,057 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A7U3CI26
- Ligands
- NAG, CL
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 215 | — | — |
| L | — | protein | 212 | — | — |
| E | — | protein | 188 | — | A0A7U3CI26 |
| A | — | protein | 228 | — | — |
| B | — | protein | 214 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains E
- CL · Chloride ion · ion · chains A, B
- GOL · Glycerol · additive · 9 copies · chains H, L, E, A, B
- ACT · Acetate ion · additive · 2 copies · chains E, A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7QNW · The receptor binding domain of SARS-CoV-2 Omicron variant spike glycoprotein in complex… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A7U3CI26
- Elsewhere: RCSB PDB 7QNW · PDBe 7QNW · UniProt A0A7U3CI26
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