MolNFT v1 · #185847 · protein
Complex of the yersinia enterocolitica type III secretion proteins yscx and yscy
7QII · Chaperone protein yscy: “Complex of the yersinia enterocolitica type III secretion proteins yscx and yscy”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #185847 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7QII
- Type
- protein
- Length
- 186 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chaperone protein yscy; Yop proteins translocation protein X
- UniProt
- P0C2N2, P0C2N4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chaperone protein yscy | protein | 110 | 77% helix, 0% strand | P0C2N2 |
| B | Yop proteins translocation protein X | protein | 76 | 74% helix, 0% strand | P0C2N4 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.34 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1726 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 7 modified (methylation).
Compared structures
- 7QII · Complex of the Yersinia enterocolitica Type III secretion proteins YscX and YscY · the same entry in another collection · chain A against A, TM-score 1.00
- P0C2N2 · AlphaFold monomer V2.0 prediction for chaperone protein yscy (P0C2N2) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P0C2N4 · AlphaFold monomer V2.0 prediction for yop proteins translocation protein X (P0C2N4) · a predicted model of the same protein · chain B against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C2N2
- Every structure of UniProt P0C2N4
- Elsewhere: RCSB PDB 7QII · PDBe 7QII · UniProt P0C2N2 · UniProt P0C2N4
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