MolNFT v1 · #185816 · protein
The mrubyft protein, genetically encoded blue-to-red fluorescent timer in its red state
7QGK · The red form of the mrubyft protein, genetically encoded…: “The mrubyft protein, genetically encoded blue-to-red fluorescent timer in its red state”. X-ray diffraction, 2 ligands (NRP, MG), 1 pocket (best druggability 0.79). MolNFT…
- PDB
- 7QGK
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- The red form of the mrubyft protein, genetically encoded blue-to-red fluorescent timer
- Ligands
- NRP, MG
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | The red form of the mrubyft protein, genetically encoded blue-to-red fluorescent timer | protein | 217 | 4% helix, 57% strand | — |
Ligands and binding sites
- NRP · {4-[(4-hydroxyphenyl)methylidene]-2-[(1E)-3-methylbutanimidoyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.79 | 0.97 | 27 | NRP |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 7QGK · The mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer in its red state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7QGK · PDBe 7QGK
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