MolNFT v1 · #185803 · protein

Cryo-EM structure of botulinum neurotoxin serotype B

7QFQ · Botulinum neurotoxin type B: “Cryo-EM structure of botulinum neurotoxin serotype B”. Electron microscopy, 19 pockets (best druggability 0.83). MolNFT v1 #185803 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7QFQ
Type: protein
Length: 1,291 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Botulinum neurotoxin type B
UniProt: P10844
Pockets: 19 · best druggability 0.83

Structure

electron microscopy · 1 distinct chain · 27% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Botulinum neurotoxin type B	protein	1291	27% helix, 16% strand	P10844

Pockets

19 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1054	0.83	0.84	86	empty
2	1095	0.82	0.83	71	empty
3	673	0.79	0.84	85	empty
4	287	0.73	0.86	37	empty
5	535	0.73	0.81	53	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

7QFQ · Cryo-EM structure of Botulinum neurotoxin serotype B · the same entry in another collection · chain A against A, TM-score 1.00
P10844 · AlphaFold monomer V2.0 prediction for botulinum neurotoxin type B (P10844) · a predicted model of the same protein · chain A against A, TM-score 0.66

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P10844
Elsewhere: RCSB PDB 7QFQ · PDBe 7QFQ · UniProt P10844

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