MolNFT v1 · #185770 · protein
Structure of octameric left-handed 310-helix bundle: D-310HD
7QDI: “Structure of octameric left-handed 310-helix bundle: D-310HD”. X-ray diffraction, 2 ligands (SO4, BO3). MolNFT v1 #185770 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QDI
- Type
- protein
- Length
- 238 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- SO4, BO3
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 31 | — | — |
| B | — | protein | 30 | — | — |
| C, E, G | — | protein | 30 | — | — |
| D, F, H | — | protein | 29 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B, H, C, D
- BO3 · Boric acid · ion · 2 copies · chains C, D
- EDO · 1,2-ethanediol · additive · 14 copies · chains A, B, C, D, F, H, E
- PEG · Di(hydroxyethyl)ether · additive · 8 copies · chains A, B, E, F, G
- PGE · Triethylene glycol · additive · 2 copies · chains A, H, B
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A, B, C
- PG6 · 1-(2-methoxy-ethoxy)-2-{2-[2-(2-methoxy-ethoxy]-ethoxy}-ethane · additive · chains C, D, E
- PG4 · Tetraethylene glycol · additive · chains E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7QDI · Structure of octameric left-handed 310-helix bundle: D-310HD · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7QDI · PDBe 7QDI
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