MolNFT v1 · #185746 · protein
Crystal structure of cadmium translocating P-type ATPase
7QC0: “Crystal structure of cadmium translocating P-type ATPase”. X-ray diffraction, 2 ligands (BEF, MG), 5 pockets (best druggability 0.74). MolNFT v1 #185746 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QC0
- Type
- protein
- Length
- 638 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cadmium translocating P-type ATPase
- UniProt
- A3T2G5
- Ligands
- BEF, MG
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cadmium translocating P-type ATPase | protein | 638 | 53% helix, 17% strand | A3T2G5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 451 | 0.74 | 0.83 | 70 | empty |
| 2 | 851 | 0.72 | 0.77 | 78 | empty |
| 3 | 50 | 0.28 | 0.76 | 18 | empty |
| 4 | 51 | 0.27 | 0.73 | 10 | empty |
| 5 | 51 | 0.25 | 0.72 | 11 | empty |
Compared structures
- 7QC0 · Crystal structure of Cadmium translocating P-type ATPase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3T2G5
- Elsewhere: RCSB PDB 7QC0 · PDBe 7QC0 · UniProt A3T2G5
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