MolNFT v1 · #185642 · protein
Lanreotide nanotube
7Q5A: “Lanreotide nanotube”. Electron microscopy, 1 ligand (NH2). MolNFT v1 #185642 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Q5A
- Type
- protein
- Length
- 64 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lanreotide
- Ligands
- NH2
Structure
electron microscopy · 1 distinct chain · 0% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Lanreotide | protein | 8 | 0% helix, 50% strand | — |
Ligands and binding sites
- NH2 · Amino group · ion · 8 copies · chains A, D, B, C, E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
13 interfaces between chains.
- E–G · 200 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 198 Ų buried · 2 hydrogen bonds · protein-protein
- F–H · 196 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 196 Ų buried · 2 hydrogen bonds · protein-protein
- D–G · 174 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 d-amino, 8 disulfide, 8 modified (D-amino acid, disulfide, nonstandard).
Compared structures
- 7Q5A · Lanreotide nanotube · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7Q5A · PDBe 7Q5A
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