MolNFT v1 · #185556 · protein + DNA
Arbitrium receptor from katmira phage
7Q0N: “Arbitrium receptor from katmira phage”. X-ray diffraction, 1 ligand (SO4), 16 pockets (best druggability 0.69). MolNFT v1 #185556 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Q0N
- Type
- protein + DNA
- Length
- 862 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arbitrium receptor; DNA (45-mer)
- UniProt
- A0A7G5CHT1
- Ligands
- SO4
- Pockets
- 16 · best druggability 0.69
Structure
x-ray diffraction · 3 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Arbitrium receptor | protein | 386 | 72% helix, 0% strand | A0A7G5CHT1 |
| C | DNA (45-mer) | dna | 45 | — | — |
| D | DNA (45-mer) | dna | 45 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 666 | 0.69 | 0.77 | 48 | SO4 |
| 2 | 683 | 0.69 | 0.76 | 54 | SO4 |
| 3 | 541 | 0.65 | 0.76 | 58 | empty |
| 4 | 430 | 0.61 | 0.76 | 48 | empty |
| 5 | 406 | 0.61 | 0.76 | 33 | empty |
Interfaces
6 interfaces between chains.
- C–D · 1950 Ų buried · 176 hydrogen bonds · nucleic-nucleic
- A–B · 1452 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 631 Ų buried · 10 hydrogen bonds · protein-nucleic
- A–C · 597 Ų buried · 8 hydrogen bonds · protein-nucleic
- B–C · 505 Ų buried · 12 hydrogen bonds · protein-nucleic
Compared structures
- 7Q0N · Arbitrium receptor from Katmira phage · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A7G5CHT1
- Elsewhere: RCSB PDB 7Q0N · PDBe 7Q0N · UniProt A0A7G5CHT1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.