MolNFT v1 · #185485 · protein
Crystal structure of arabidopsis thaliana 5-enol-pyruvyl-shikimate-3- phosphate synthase (epsps) in open conformation
7PXY · 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic: “Crystal structure of arabidopsis thaliana 5-enol-pyruvyl-shikimate-3- phosphate synthase (epsps) in open…”. X-ray diffraction, 2 ligands (MG, CL), 2 pockets (best…
- PDB
- 7PXY
- Type
- protein
- Length
- 444 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic
- EC
- 2.5.1.19
- UniProt
- P05466
- Ligands
- MG, CL
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (EC 2.5.1.19) | protein | 444 | 35% helix, 24% strand | P05466 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 441 | 0.59 | 0.75 | 44 | CL |
| 2 | 50 | 0.38 | 0.81 | 14 | empty |
Compared structures
- 7PXY · Crystal structure of Arabidopsis thaliana 5-enol-pyruvyl-shikimate-3-phosphate synthase… · the same entry in another collection · chain A against A, TM-score 1.00
- P05466 · AlphaFold monomer V2.0 prediction for 3-phosphoshikimate 1-carboxyvinyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05466
- Elsewhere: RCSB PDB 7PXY · PDBe 7PXY · UniProt P05466
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