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MolNFT v1 · #185448 · protein + RNA

Cryo-EM structure of small subunit of giardia lamblia ribosome at 2.9 a resolution

7PWF: “Cryo-EM structure of small subunit of giardia lamblia ribosome at 2.9 a resolution”. Electron microscopy, 2 ligands (K, MG). MolNFT v1 #185448 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7PWF
Type
protein + RNA
Length
5,320 residues
Chains
32
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
A8B7H6, A0A644F964, A8BE02, A8BKS8, A8B8Z2, A8BS96, A8BZ58, A8BKC6, A8BMZ1, A8BE86, A8BS79, A8B593, A8BJL1, A8BQZ7, A8B8H7, A8B484, A8BBP3, A8BRG5, A8BRX3, A8B252, A0A644F843, A8B4F3, E2RU83, E2RU77, A8BFE3, V6TVJ7, A8B4G0, A8B6L8, A8BZD3
Ligands
K, MG

Structure

electron microscopy · 32 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
d—protein48—A8B7H6
T—protein130—A0A644F964
N—protein152—A8BE02
J—protein166—A8BKS8
D—protein182—A8B8Z2
X—protein142—A8BS96
S—protein133—A8BZ58
Q—protein125—A8BKC6
C—protein212—A8BMZ1
A—protein194—A8BE86
B—protein218—A8BS79
Y—protein90—A8B593
b—protein79—A8BJL1
a—protein97—A8BQZ7
Z—protein59—A8B8H7
V—protein82—A8B484
P—protein105—A8BBP3
R—protein101—A8BRG5
K—protein83—A8BRX3
I—protein163—A8B252
e—protein37—A0A644F843
H—protein162——
n—protein24——
c—protein55—A8B4F3
O—protein126—E2RU83
W—protein129—E2RU77
E—protein258—A8BFE3
2—rna1355——
L—protein181—V6TVJ7
U—protein74—A8B4G0
G—protein197—A8B6L8
F—protein161—A8BZD3

Ligands and binding sites

  • K · Potassium ion · metal · 266 copies · chains d, N, 2, S, A, b, R, O, a, W, E, J, U, n, I, G, X, L, C, B
  • MG · Magnesium ion · metal · 37 copies · chains N, I, 2, G, X, a, b

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7PWF · Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolution · the same entry in another collection · chain B against B, TM-score 1.00

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