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MolNFT v1 · #185433 · protein

Crystal structure of the folded domain of porn

7PVH · Por secretion system protein PORN/GLDN: “Crystal structure of the folded domain of porn”. X-ray diffraction, 4 pockets (best druggability 0.74). MolNFT v1 #185433 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7PVH
Type: protein
Length: 384 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Por secretion system protein PORN/GLDN
UniProt: B2RLE7
Pockets: 4 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 25% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Por secretion system protein PORN/GLDN	protein	195	24% helix, 31% strand	B2RLE7
B	Por secretion system protein PORN/GLDN	protein	189	26% helix, 31% strand	B2RLE7

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	222	0.74	0.89	37	empty
2	70	0.34	0.76	18	empty
3	52	0.29	0.75	14	empty
4	51	0.28	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 1403 Å² buried · 28 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

7PVH · Crystal structure of the folded domain of PorN · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2RLE7
Elsewhere: RCSB PDB 7PVH · PDBe 7PVH · UniProt B2RLE7

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