MolNFT v1 · #185416 · protein
Crystal structure of endoglycosidase E GH18 domain from enterococcus faecalis
7PUJ · Beta-N-acetylhexosaminidase: “Crystal structure of endoglycosidase E GH18 domain from enterococcus faecalis”. X-ray diffraction, 2 ligands (ZN, CL), 3 pockets (best druggability 0.48). MolNFT v1 #185416 on GenesisL1: 3D structure…
- PDB
- 7PUJ
- Type
- protein
- Length
- 422 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-N-acetylhexosaminidase
- EC
- 3.2.1.52
- UniProt
- Q6U890
- Ligands
- ZN, CL
- Pockets
- 3 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-N-acetylhexosaminidase (EC 3.2.1.52) | protein | 422 | 50% helix, 11% strand | Q6U890 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.48 | 0.82 | 24 | ZN |
| 2 | 146 | 0.43 | 0.75 | 27 | empty |
| 3 | 75 | 0.29 | 0.73 | 14 | empty |
Compared structures
- 7PUJ · Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6U890
- Elsewhere: RCSB PDB 7PUJ · PDBe 7PUJ · UniProt Q6U890
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