MolNFT v1 · #185369 · protein
Crystal structure of the receptor binding domain of SARS-cov-2 beta variant spike glycoprotein in complex with beta-44 and beta-54 fabs
7PS6: “Crystal structure of the receptor binding domain of SARS-cov-2 beta variant spike glycoprotein in complex…”. X-ray diffraction, 3 ligands (NAG, FUC, CL). MolNFT v1 #185369 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7PS6
- Type
- protein
- Length
- 1,060 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC, CL
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 229 | — | — |
| L | — | protein | 214 | — | — |
| E | — | protein | 182 | — | P0DTC2 |
| C | — | protein | 221 | — | — |
| D | — | protein | 214 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains E
- FUC · alpha-L-fucopyranose · sugar
- CL · Chloride ion · ion · chains C, D
- GOL · Glycerol · additive · 2 copies · chains E, C, D
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains C
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PS6 · Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7PS6 · PDBe 7PS6 · UniProt P0DTC2
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