MolNFT v1 · #185341 · protein

Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in complex with fd-5D Fab

7PR0: “Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in complex with fd-5D Fab”. X-ray diffraction, 4 ligands (NAG, SO4, NO3). MolNFT v1 #185341 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 7PR0
Type: protein
Length: 1,892 residues
Chains: 9
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0DTC2
Ligands: NAG, SO4, NO3, CL

Structure

x-ray diffraction · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
E, D	—	protein	197	—	P0DTC2
L	—	protein	221	—	—
H	—	protein	228	—	—
A	—	protein	199	—	P0DTC2
B	—	protein	219	—	—
C	—	protein	223	—	—
F	—	protein	217	—	—
G	—	protein	191	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains E, A, D
SO4 · Sulfate ion · ion · 3 copies · chains E, L, H
NO3 · Nitrate ion · ion · 3 copies · chains L, H, C
CL · Chloride ion · ion · 3 copies · chains L, E, H, G
GOL · Glycerol · additive · 2 copies · chains B, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7PR0 · Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in… · the same entry in another collection · chain E against E, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTC2
Elsewhere: RCSB PDB 7PR0 · PDBe 7PR0 · UniProt P0DTC2

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