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MolNFT v1 · #185297 · protein

Spin labeled ipns S55C variant in complex with fe, acv and no

7POY · Isopenicillin N synthase: “Spin labeled ipns S55C variant in complex with fe, acv and no”. X-ray diffraction, 5 ligands (ACV, 81T, FE), 1 pocket (best druggability 0.82). MolNFT v1 #185297 on GenesisL1: 3D structure, binding sites…

PDB
7POY
Type
protein
Length
328 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Isopenicillin N synthase
EC
1.21.3.1
UniProt
P05326
Ligands
ACV, 81T, FE, SO4, NO
Pockets
1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 22% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AIsopenicillin N synthase (EC 1.21.3.1)protein32829% helix, 22% strandP05326

Ligands and binding sites

  • ACV · L-D-(A-aminoadipoyl)-L-cysteinyl-D-valine · ligand · chains A
  • 81T · ~{N}-[(3~{R})-2,2,5,5-tetramethyl-1-oxidanyl-pyrrolidin-3-yl]ethanamide · ligand · chains A
  • FE · Fe (III) ion · metal · chains A
  • SO4 · Sulfate ion · ion · 4 copies · chains A
  • NO · Nitric oxide · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15530.820.8767FE, ACV, NO

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

  • 7POY · Spin labeled IPNS S55C variant in complex with Fe, ACV and NO · the same entry in another collection · chain A against A, TM-score 1.00
  • P05326 · AlphaFold monomer V2.0 prediction for isopenicillin N synthase (P05326) · a predicted model of the same protein · chain A against A, TM-score 0.99

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