MolNFT v1 · #185166 · protein

MAP of P5C3RBD interface

7PHG · Surface glycoprotein: “MAP of P5C3RBD interface”. Electron microscopy, 3 pockets (best druggability 0.45). MolNFT v1 #185166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7PHG
Type: protein
Length: 427 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Surface glycoprotein; Heavy chain variable; Light chain
UniProt: A0A7S6Y2X1
Pockets: 3 · best druggability 0.45

Structure

electron microscopy · 3 distinct chains · 6% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Surface glycoprotein	protein	196	9% helix, 17% strand	A0A7S6Y2X1
H	Heavy chain variable	protein	123	5% helix, 40% strand	—
L	Light chain	protein	108	3% helix, 38% strand	—

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.45	0.75	25	empty
2	65	0.42	0.81	15	empty
3	62	0.29	0.74	17	empty

Interfaces

3 interfaces between chains.

H–L · 912 Å² buried · 9 hydrogen bonds · protein-protein
A–H · 645 Å² buried · 8 hydrogen bonds · protein-protein
A–L · 323 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 7 disulfide (disulfide).

Compared structures

7PHG · MaP OF P5C3RBD Interface · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A7S6Y2X1
Elsewhere: RCSB PDB 7PHG · PDBe 7PHG · UniProt A0A7S6Y2X1

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