MolNFT v1 · #185119 · protein

The SARS-COV2 major protease (mpro) apo structure to 1.8 a resolution

7PFL · Replicase polyprotein 1AB: “The SARS-COV2 major protease (mpro) apo structure to 1.8 a resolution”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.49). MolNFT v1 #185119 on GenesisL1: 3D structure, binding sites…

PDB: 7PFL
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Replicase polyprotein 1AB
UniProt: P0DTD1
Ligands: NA
Pockets: 2 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Replicase polyprotein 1AB	protein	305	26% helix, 29% strand	P0DTD1

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	198	0.49	0.76	25	NA
2	77	0.33	0.74	16	empty

Compared structures

7PFL · The SARS-CoV2 major protease (Mpro) apo structure to 1.8 A resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTD1
Elsewhere: RCSB PDB 7PFL · PDBe 7PFL · UniProt P0DTD1

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