MolNFT v1 · #185050 · protein
Crystal structure of the L-tyrosine-bound radical SAM tyrosine lyase thih (2-iminoacetate synthase) from thermosinus carboxydivorans
7PD1: “Crystal structure of the L-tyrosine-bound radical SAM tyrosine lyase thih (2-iminoacetate synthase) from…”. X-ray diffraction, 5 ligands (SF4, 5AD, K). MolNFT v1 #185050 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7PD1
- Type
- protein
- Length
- 737 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A1HPQ5
- Ligands
- SF4, 5AD, K, BR, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 368 | — | A1HPQ5 |
| B | — | protein | 369 | — | A1HPQ5 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains A, B
- 5AD · 5'-deoxyadenosine · ligand · 2 copies · chains A, B
- K · Potassium ion · metal · chains A
- BR · Bromide ion · ion · 11 copies · chains A, B
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PD1 · Crystal structure of the L-tyrosine-bound radical SAM tyrosine lyase ThiH (2-iminoacetate… · the same entry in another collection · chain B against B, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1HPQ5
- Elsewhere: RCSB PDB 7PD1 · PDBe 7PD1 · UniProt A1HPQ5
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