MolNFT v1 · #185049 · protein

Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants

7PD0: “Functional and structural characterization of redox sensitive superfolder green fluorescent protein and…”. X-ray diffraction, 1 ligand (CRO). MolNFT v1 #185049 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7PD0
Type: protein
Length: 923 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P42212
Ligands: CRO

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	227	—	P42212
B	—	protein	227	—	P42212
C	—	protein	234	—	P42212
D	—	protein	235	—	P42212

Ligands and binding sites

CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · 4 copies · chains A, B, C, D
PEG · Di(hydroxyethyl)ether · additive · 7 copies · chains A, B, C, D
PGE · Triethylene glycol · additive · 3 copies · chains A, C
GOL · Glycerol · additive · chains D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7PD0 · Functional and structural characterization of redox sensitive superfolder green… · the same entry in another collection · chain D against D, TM-score 1.00
P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain B against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42212
Elsewhere: RCSB PDB 7PD0 · PDBe 7PD0 · UniProt P42212

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