MolNFT v1 · #185016 · protein
HIV-1 env (BG505 SOSIP.664) in complex with the IgA bnab 7-269 and the antibody 3BNC117.
7PC2: “HIV-1 env (BG505 SOSIP.664) in complex with the IgA bnab 7-269 and the antibody 3BNC117.”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #185016 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7PC2
- Type
- protein
- Length
- 3,093 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| O, M, Q | — | protein | 130 | — | — |
| P, N, R | — | protein | 108 | — | — |
| A, B, C | — | protein | 445 | — | — |
| D, E, F | — | protein | 129 | — | — |
| K, G, I | — | protein | 121 | — | — |
| L, H, J | — | protein | 98 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 108 copies · chains A, D, L, Q, K, B, F, I, J, O, C, E, G, H, M, R, P, N
- MAN · alpha-D-mannopyranose · sugar · 77 copies · chains Q, A, L, R, J, O, P, B, M, H, N, C
- BMA · beta-D-mannopyranose · sugar · 25 copies · chains L, Q, J, O, H, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PC2 · HIV-1 Env (BG505 SOSIP.664) in complex with the IgA bNAb 7-269 and the antibody 3BNC117. · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7PC2 · PDBe 7PC2
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