MolNFT v1 · #185009 · protein
Crystal structure of paradendryphiella salina PL7A alginate lyase in complex with di-mannuronic acid
7PBF · Alginate lyase (PL7): “Crystal structure of paradendryphiella salina PL7A alginate lyase in complex with di-mannuronic acid”. X-ray diffraction, 2 ligands (MAV, BEM), 1 pocket (best druggability 0.24). MolNFT v1 #185009 on…
- PDB
- 7PBF
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginate lyase (PL7)
- UniProt
- A0A485PVH1
- Ligands
- MAV, BEM
- Pockets
- 1 · best druggability 0.24
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alginate lyase (PL7) | protein | 226 | 8% helix, 54% strand | A0A485PVH1 |
Ligands and binding sites
- MAV · alpha-D-mannopyranuronic acid · ligand · chains A
- BEM · beta-D-mannopyranuronic acid · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.24 | 0.72 | 19 | MAV |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7PBF · Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A485PVH1
- Elsewhere: RCSB PDB 7PBF · PDBe 7PBF · UniProt A0A485PVH1
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