MolNFT v1 · #18500 · protein

Crystal structure of formyl-CoA transferase yfdw from E. COLI

1PQY · Hypothetical protein yfdw: “Crystal structure of formyl-CoA transferase yfdw from E. COLI”. X-ray diffraction, 5 pockets (best druggability 0.57). MolNFT v1 #18500 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1PQY
Type: protein
Length: 412 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein yfdw
UniProt: P69902
Pockets: 5 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein yfdw	protein	412	40% helix, 13% strand	P69902

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	128	0.57	0.83	20	empty
2	192	0.56	0.79	36	empty
3	176	0.55	0.80	40	empty
4	144	0.43	0.75	22	empty
5	121	0.41	0.75	20	empty

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

1PQY · Crystal structure of formyl-coA transferase yfdW from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
P69902 · AlphaFold monomer V2.0 prediction for formyl-COA:OXALATE CoA- transferase (P69902) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P69902
Elsewhere: RCSB PDB 1PQY · PDBe 1PQY · UniProt P69902

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