MolNFT v1 · #184960 · protein
Crystal structure of leukotoxin luke from staphylococcus aureus in complex with a sulfated ACKR1 N-terminal peptide
7P93 · Leucotoxin lukev: “Crystal structure of leukotoxin luke from staphylococcus aureus in complex with a sulfated ACKR1 N-terminal…”. X-ray diffraction. MolNFT v1 #184960 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P93
- Type
- protein
- Length
- 298 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Leucotoxin lukev; Atypical chemokine receptor 1
- UniProt
- Q2FXB0, Q16570
Structure
x-ray diffraction · 3 distinct chains · 5% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leucotoxin lukev | protein | 280 | 4% helix, 62% strand | Q2FXB0 |
| B | Atypical chemokine receptor 1 | protein | 8 | 0% helix, 25% strand | Q16570 |
| M | Atypical chemokine receptor 1 | protein | 10 | 30% helix, 0% strand | Q16570 |
Interfaces
3 interfaces between chains.
- A–B · 485 Ų buried · 10 hydrogen bonds · protein-protein
- A–M · 407 Ų buried · 10 hydrogen bonds · protein-protein
- B–M · 151 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (sulfation).
Compared structures
- 7P93 · Crystal Structure of leukotoxin LukE from Staphylococcus aureus in complex with a… · the same entry in another collection · chain A against A, TM-score 1.00
- Q2FXB0 · AlphaFold monomer V2.0 prediction for leucotoxin lukev (Q2FXB0) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q16570 · AlphaFold monomer V2.0 prediction for atypical chemokine receptor 1 (Q16570) · a predicted model of the same protein · chain B against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FXB0
- Every structure of UniProt Q16570
- Elsewhere: RCSB PDB 7P93 · PDBe 7P93 · UniProt Q2FXB0 · UniProt Q16570
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