MolNFT v1 · #184904 · protein
Crystal structure of the fimh-binding decoy module of human glycoprotein 2 (GP2) (crystal form I)
7P6R · Isoform alpha of pancreatic secretory granule membrane…: “Crystal structure of the fimh-binding decoy module of human glycoprotein 2 (GP2) (crystal form I)”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #184904 on GenesisL1: 3D…
- PDB
- 7P6R
- Type
- protein
- Length
- 265 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isoform alpha of pancreatic secretory granule membrane major glycoprotein GP2
- UniProt
- P55259
- Ligands
- NAG
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isoform alpha of pancreatic secretory granule membrane major glycoprotein GP2 | protein | 133 | 5% helix, 38% strand | P55259 |
| B | Isoform alpha of pancreatic secretory granule membrane major glycoprotein GP2 | protein | 132 | 5% helix, 36% strand | P55259 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 330 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 disulfide, 5 glycan (disulfide, N-glycosylation).
Compared structures
- 7P6R · Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal… · the same entry in another collection · chain A against A, TM-score 1.00
- P55259 · AlphaFold monomer V2.0 prediction for pancreatic secretory granule membrane major… · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55259
- Elsewhere: RCSB PDB 7P6R · PDBe 7P6R · UniProt P55259
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.