MolNFT v1 · #184835 · protein
Crystal structure of xanthomonas campestris tryptophan 2,3-dioxygenase (tdo)
7P46: “Crystal structure of xanthomonas campestris tryptophan 2,3-dioxygenase (tdo)”. X-ray diffraction, 2 ligands (HEM, CYN). MolNFT v1 #184835 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P46
- Type
- protein
- Length
- 2,251 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8PDA8
- Ligands
- HEM, CYN
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 283 | — | Q8PDA8 |
| B | — | protein | 283 | — | Q8PDA8 |
| C | — | protein | 281 | — | Q8PDA8 |
| D | — | protein | 282 | — | Q8PDA8 |
| E | — | protein | 280 | — | Q8PDA8 |
| F | — | protein | 281 | — | Q8PDA8 |
| G | — | protein | 279 | — | Q8PDA8 |
| H | — | protein | 282 | — | Q8PDA8 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 8 copies · chains A, B, C, D, E, G, F, H
- CYN · Cyanide ion · ion · 6 copies · chains A, B, C, D, F, H
- GOL · Glycerol · additive · 14 copies · chains A, C, B, E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P46 · Crystal Structure of Xanthomonas campestris Tryptophan 2,3-dioxygenase (TDO) · the same entry in another collection · chain A against A, TM-score 0.99
- Q8PDA8 · AlphaFold monomer V2.0 prediction for tryptophan 2,3-dioxygenase (Q8PDA8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PDA8
- Elsewhere: RCSB PDB 7P46 · PDBe 7P46 · UniProt Q8PDA8
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