MolNFT v1 · #184812 · protein + DNA
Streptomyces coelicolor DATP/ATP-loaded nrdr in complex with its cognate DNA
7P3F: “Streptomyces coelicolor DATP/ATP-loaded nrdr in complex with its cognate DNA”. Electron microscopy, 3 ligands (ATP, DTP, ZN). MolNFT v1 #184812 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P3F
- Type
- protein + DNA
- Length
- 688 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O69980
- Ligands
- ATP, DTP, ZN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, B, D | — | protein | 147 | — | O69980 |
| F | — | dna | 50 | — | — |
| R | — | dna | 50 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, C, B, D
- DTP · 2'-deoxyadenosine 5'-triphosphate · ligand · 4 copies · chains A, B, C, D
- ZN · Zinc ion · metal · 4 copies · chains A, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P3F · Streptomyces coelicolor dATP/ATP-loaded NrdR in complex with its cognate DNA · the same entry in another collection · chain B against B, TM-score 1.00
- O69980 · AlphaFold monomer V2.0 prediction for transcriptional repressor nrdr (O69980) · a predicted model of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O69980
- Elsewhere: RCSB PDB 7P3F · PDBe 7P3F · UniProt O69980
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