MolNFT v1 · #184791 · protein
Human signal peptidase complex paralog C (spc-C)
7P2Q: “Human signal peptidase complex paralog C (spc-C)”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #184791 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P2Q
- Type
- protein
- Length
- 587 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9BY50, P61009, Q15005, Q9Y6A9
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 148 | — | Q9BY50 |
| B | — | protein | 179 | — | P61009 |
| C | — | protein | 174 | — | Q15005 |
| D | — | protein | 86 | — | Q9Y6A9 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains B
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P2Q · Human Signal Peptidase Complex Paralog C (SPC-C) · the same entry in another collection · chain D against D, TM-score 1.00
- Q9BY50 · AlphaFold monomer V2.0 prediction for signal peptidase complex catalytic subunit SEC11C… · a predicted model of the same protein · chain A against A, TM-score 0.84
- P61009 · AlphaFold monomer V2.0 prediction for signal peptidase complex subunit 3 (P61009) · a predicted model of the same protein · chain B against A, TM-score 0.83
- Q15005 · AlphaFold monomer V2.0 prediction for signal peptidase complex subunit 2 (Q15005) · a predicted model of the same protein · chain C against A, TM-score 0.79
- Q9Y6A9 · AlphaFold monomer V2.0 prediction for signal peptidase complex subunit 1 (Q9Y6A9) · a predicted model of the same protein · chain D against A, TM-score 0.62
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BY50
- Every structure of UniProt P61009
- Every structure of UniProt Q15005
- Every structure of UniProt Q9Y6A9
- Elsewhere: RCSB PDB 7P2Q · PDBe 7P2Q · UniProt Q9BY50 · UniProt P61009 · UniProt Q15005 · UniProt Q9Y6A9
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