MolNFT v1 · #184774 · protein

Thaumatin-like protein of puccinia graminis

7P23: “Thaumatin-like protein of puccinia graminis”. X-ray diffraction, 1 ligand (NA), 5 pockets (best druggability 0.60). MolNFT v1 #184774 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7P23
Type: protein
Length: 470 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thaumatin-like protein of puccinia graminis
UniProt: E3L7F9
Ligands: NA
Pockets: 5 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Thaumatin-like protein of puccinia graminis	protein	235	16% helix, 31% strand	E3L7F9

Ligands and binding sites

NA · Sodium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	383	0.60	0.76	46	empty
2	78	0.35	0.76	19	empty
3	65	0.32	0.75	19	empty
4	57	0.30	0.76	13	empty
5	57	0.30	0.76	14	empty

Interfaces

1 interface between chains.

A–B · 396 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 16 disulfide (disulfide).

Compared structures

7P23 · Thaumatin-like protein of Puccinia graminis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E3L7F9
Elsewhere: RCSB PDB 7P23 · PDBe 7P23 · UniProt E3L7F9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.