MolNFT v1 · #184688 · protein
Mature capsid of bacteriophage PHIRSA1
7OZ4 · P2 family phage major capsid protein: “Mature capsid of bacteriophage PHIRSA1”. Electron microscopy, 20 pockets (best druggability 0.69). MolNFT v1 #184688 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OZ4
- Type
- protein
- Length
- 2,139 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P2 family phage major capsid protein
- UniProt
- A4PE30
- Pockets
- 20 · best druggability 0.69
Structure
electron microscopy · 4 distinct chains · 28% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, D | P2 family phage major capsid protein | protein | 306 | 29% helix, 27% strand | A4PE30 |
| G, F | P2 family phage major capsid protein | protein | 305 | 28% helix, 23% strand | A4PE30 |
| B | P2 family phage major capsid protein | protein | 307 | 29% helix, 29% strand | A4PE30 |
| C | P2 family phage major capsid protein | protein | 304 | 26% helix, 31% strand | A4PE30 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 635 | 0.69 | 0.77 | 82 | empty |
| 2 | 566 | 0.68 | 0.77 | 73 | empty |
| 3 | 552 | 0.65 | 0.76 | 63 | empty |
| 4 | 473 | 0.65 | 0.77 | 69 | empty |
| 5 | 166 | 0.63 | 0.85 | 25 | empty |
Interfaces
7 interfaces between chains.
- B–C · 3025 Ų buried · 59 hydrogen bonds · protein-protein
- A–F · 2989 Ų buried · 56 hydrogen bonds · protein-protein
- E–D · 2915 Ų buried · 54 hydrogen bonds · protein-protein
- A–B · 2860 Ų buried · 48 hydrogen bonds · protein-protein
- C–D · 2826 Ų buried · 54 hydrogen bonds · protein-protein
Compared structures
- 7OZ4 · Mature capsid of bacteriophage phiRSA1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4PE30
- Elsewhere: RCSB PDB 7OZ4 · PDBe 7OZ4 · UniProt A4PE30
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