MolNFT v1 · #184405 · protein
Cryo-EM structure of P5B-ATPase E2P
7OP5: “Cryo-EM structure of P5B-ATPase E2P”. Electron microscopy, 2 ligands (BEF, MG), 16 pockets (best druggability 0.76). MolNFT v1 #184405 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OP5
- Type
- protein
- Length
- 1,076 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P5B-ATPase
- UniProt
- G0S7G9
- Ligands
- BEF, MG
- Pockets
- 16 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P5B-ATPase | protein | 1076 | 39% helix, 16% strand | G0S7G9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 961 | 0.76 | 0.79 | 74 | empty |
| 2 | 387 | 0.76 | 0.86 | 71 | empty |
| 3 | 760 | 0.72 | 0.78 | 82 | empty |
| 4 | 687 | 0.69 | 0.77 | 85 | BEF, MG |
| 5 | 51 | 0.68 | 0.96 | 14 | empty |
Compared structures
- 7OP5 · Cryo-EM structure of P5B-ATPase E2P · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0S7G9
- Elsewhere: RCSB PDB 7OP5 · PDBe 7OP5 · UniProt G0S7G9
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