MolNFT v1 · #184388 · protein
N-terminal domain of flsp spidroin from nephila clavipes
7OOM · Flagelliform spidroin variant 1: “N-terminal domain of flsp spidroin from nephila clavipes”. X-ray diffraction, 2 pockets (best druggability 0.39). MolNFT v1 #184388 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OOM
- Type
- protein
- Length
- 245 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagelliform spidroin variant 1
- UniProt
- A0A2S2B4P9
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagelliform spidroin variant 1 | protein | 120 | 78% helix, 0% strand | A0A2S2B4P9 |
| B | Flagelliform spidroin variant 1 | protein | 125 | 78% helix, 0% strand | A0A2S2B4P9 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.39 | 0.77 | 23 | empty |
| 2 | 81 | 0.38 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1626 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 7OOM · N-terminal domain of FlSp spidroin from Nephila clavipes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S2B4P9
- Elsewhere: RCSB PDB 7OOM · PDBe 7OOM · UniProt A0A2S2B4P9
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