MolNFT v1 · #184324 · protein + RNA
Thosea asigna virus rdrp domain in complex with RNA and nucleotide umpnpp
7OM7: “Thosea asigna virus rdrp domain in complex with RNA and nucleotide umpnpp”. X-ray diffraction, 2 ligands (2KH, MN). MolNFT v1 #184324 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OM7
- Type
- protein + RNA
- Length
- 2,575 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6A562
- Ligands
- 2KH, MN
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 628 | — | Q6A562 |
| B | — | protein | 629 | — | Q6A562 |
| C | — | protein | 632 | — | Q6A562 |
| D | — | protein | 629 | — | Q6A562 |
| E, G, L | — | rna | 6 | — | — |
| F, H, I, K | — | rna | 8 | — | — |
| J | — | rna | 7 | — | — |
Ligands and binding sites
- 2KH · 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine · ligand · 2 copies · chains A, E, F, B, G, H
- MN · Manganese (II) ion · metal · chains A, E
- PEG · Di(hydroxyethyl)ether · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OM7 · Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6A562
- Elsewhere: RCSB PDB 7OM7 · PDBe 7OM7 · UniProt Q6A562
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.