MolNFT v1 · #184277 · protein
Crystal structure of human BCL6 btb domain in complex with compound 12E
7OKK: “Crystal structure of human BCL6 btb domain in complex with compound 12E”. X-ray diffraction, 2 ligands (VH8, CL). MolNFT v1 #184277 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OKK
- Type
- protein
- Length
- 128 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P41182
- Ligands
- VH8, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 123 | — | P41182 |
| B | — | protein | 5 | — | — |
Ligands and binding sites
- VH8 · 2-[[6-[(2-chloranyl-3-cyano-pyridin-4-yl)amino]-2-oxidanylidene-1H-quinolin-4-yl]amino]-N-methyl-ethanamide · ligand · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OKK · Crystal structure of human BCL6 BTB domain in complex with compound 12e · the same entry in another collection · chain B against B, TM-score 1.00
- P41182 · AlphaFold monomer V2.0 prediction for B-cell lymphoma 6 protein (P41182) · a predicted model of the same protein · chain A against A, TM-score 0.31
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41182
- Elsewhere: RCSB PDB 7OKK · PDBe 7OKK · UniProt P41182
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