MolNFT v1 · #184270 · protein
Crystal structure of human BCL6 btb domain in complex with compound 25
7OKD · B-cell lymphoma 6 protein: “Crystal structure of human BCL6 btb domain in complex with compound 25”. X-ray diffraction, 1 ligand (VGW). MolNFT v1 #184270 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OKD
- Type
- protein
- Length
- 131 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B-cell lymphoma 6 protein
- UniProt
- P41182
- Ligands
- VGW
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | B-cell lymphoma 6 protein | protein | 131 | 50% helix, 15% strand | P41182 |
Ligands and binding sites
- VGW · 2-chloranyl-4-[[4-[2-(5-cyclopropylpyrimidin-2-yl) propan-2-ylamino]-1-methyl-2-oxidanylidene-quinolin-6-yl]amino]pyridine-3-carbonitrile · ligand · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OKD · Crystal structure of human BCL6 BTB domain in complex with compound 25 · the same entry in another collection · chain A against A, TM-score 1.00
- P41182 · AlphaFold monomer V2.0 prediction for B-cell lymphoma 6 protein (P41182) · a predicted model of the same protein · chain A against A, TM-score 0.33
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41182
- Elsewhere: RCSB PDB 7OKD · PDBe 7OKD · UniProt P41182
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