MolNFT v1 · #18426 · protein
Solution structure of a superantigen from yersinia pseudotuberculosis
1POQ · Ypm: “Solution structure of a superantigen from yersinia pseudotuberculosis”. Solution nmr, 1 pocket (best druggability 0.47). MolNFT v1 #18426 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1POQ
- Type
- protein
- Length
- 118 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ypm
- UniProt
- Q57221
- Pockets
- 1 · best druggability 0.47
Structure
solution nmr · 1 distinct chain · 0% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ypm | protein | 118 | 0% helix, 37% strand | Q57221 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.47 | 0.80 | 25 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1POQ · Solution Structure of a Superantigen from Yersinia pseudotuberculosis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57221
- Elsewhere: RCSB PDB 1POQ · PDBe 1POQ · UniProt Q57221
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