MolNFT v1 · #184208 · DNA

A self-complementary DNA dodecamer duplex contaning 5- hydroxymethylcitosine

7OHJ · DNA (5'-D(*CP*GP*AP*CP*GP*TP*CP*G)-3'): “A self-complementary DNA dodecamer duplex contaning 5- hydroxymethylcitosine”. Solution nmr. MolNFT v1 #184208 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7OHJ
Type: DNA
Length: 16 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*AP*CP*GP*TP*CP*G)-3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPAPCPGPTPCPG)-3')	dna	8	—	—

Interfaces

1 interface between chains.

A–B · 391 Å² buried · 43 hydrogen bonds · nucleic-nucleic

Compared structures

7OHJ · A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7OHJ · PDBe 7OHJ

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