MolNFT v1 · #184139 · protein
Model of open pentamer of the haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction
7OEU · LINOCIN_M18 bacteriocin protein: “Model of open pentamer of the haliangium ochraceum encapsulin from symmetry expansion of icosahedral single…”. Electron microscopy, 11 pockets (best druggability 0.66). MolNFT v1 #184139 on…
- PDB
- 7OEU
- Type
- protein
- Length
- 1,375 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LINOCIN_M18 bacteriocin protein; Haliangium ochraceum encapsulated ferritin
- UniProt
- D0LZ74, D0LZ73
- Pockets
- 11 · best druggability 0.66
Structure
electron microscopy · 2 distinct chains · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | LINOCIN_M18 bacteriocin protein | protein | 266 | 34% helix, 29% strand | D0LZ74 |
| 1, 2, 3, 4, 5 | Haliangium ochraceum encapsulated ferritin | protein | 9 | 0% helix, 0% strand | D0LZ73 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 672 | 0.66 | 0.75 | 78 | empty |
| 2 | 621 | 0.65 | 0.75 | 72 | empty |
| 3 | 581 | 0.65 | 0.76 | 69 | empty |
| 4 | 534 | 0.64 | 0.76 | 49 | empty |
| 5 | 466 | 0.63 | 0.76 | 49 | empty |
Interfaces
10 interfaces between chains.
- 4–D · 555 Ų buried · 7 hydrogen bonds · protein-protein
- 5–E · 552 Ų buried · 10 hydrogen bonds · protein-protein
- A–E · 552 Ų buried · 5 hydrogen bonds · protein-protein
- 2–B · 552 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 551 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7OEU · Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0LZ74
- Every structure of UniProt D0LZ73
- Elsewhere: RCSB PDB 7OEU · PDBe 7OEU · UniProt D0LZ74 · UniProt D0LZ73
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